############################### # TileMap Import Affymetrix # ############################### [Working directory] = . [BPMAP file] = P1_CHIP_A.Anti-Sense.hs.NCBIv33.sary.bpmap [Export file] = sample1_rawdata.txt ############################### # Arrays # ############################### [Array number] = 18 [Arrays] IP_5_3A.CEL Jurkat_anti-cMyc_A_1_1 IP_5_4A.CEL Jurkat_anti-cMyc_A_1_2 IP_5_5A.CEL Jurkat_anti-cMyc_A_1_3 IP_1_3A.CEL Jurkat_anti-GST_A_1_1 IP_1_4A.CEL Jurkat_anti-GST_A_1_2 IP_1_5A.CEL Jurkat_anti-GST_A_1_3 IP_7_3A.CEL Jurkat_Input_A_1_1 IP_7_4A.CEL Jurkat_Input_A_1_2 IP_7_5A.CEL Jurkat_Input_A_1_3 IP_6_1A.CEL Jurkat_anti-cMyc_A_2_1 IP_6_2A.CEL Jurkat_anti-cMyc_A_2_2 IP_6_3A.CEL Jurkat_anti-cMyc_A_2_3 IP_2_1A.CEL Jurkat_anti-GST_A_2_1 IP_2_4A.CEL Jurkat_anti-GST_A_2_2 IP_2_3A.CEL Jurkat_anti-GST_A_2_3 IP_8_1A.CEL Jurkat_Input_A_2_1 IP_8_2A.CEL Jurkat_Input_A_2_2 IP_8_3A.CEL Jurkat_Input_A_2_3 ############################### # Normalization # ############################### [Apply normalization before computing intensity] (1:yes; 0:no) = 1 [Truncation lower bound before normalization] = -100000000.0 [Take log2 transformation before normalization] (1:yes; 0:no) = 0 ############################### # Method to Compute Intensity # ############################### [How to compute intensity] (0: PM only, 1: PM-MM) = 0 [Truncation lower bound after intensity computation] = -100000000.0 [Take log2 transformation after intensity computation] (1:yes; 0:no) = 0